19#ifndef CLUSTALO_TREE_H
20#define CLUSTALO_TREE_H
34 mseq_t *mseq,
char *ftree);
structure for storing multiple sequences
Definition seq.h:47
symmetric matrix structure
Definition symmatrix.h:48
guide-tree structure
Definition muscle_tree.h:59
@ PRNT_NODE
Definition tree.h:26
@ LEFT_NODE
Definition tree.h:26
@ RGHT_NODE
Definition tree.h:26
@ DIFF_NODE
Definition tree.h:26
int GuideTreeFromFile(tree_t **tree, mseq_t *mseq, char *ftree)
Definition tree.c:99
void TraverseTree(int **piOrderLR_p, tree_t *tree, mseq_t *mseq)
Depth first traversal of tree, i.e. leaf nodes (sequences) will be visited first. Order can be used t...
Definition tree.c:166
void GuideTreeUpgma(tree_t **tree, char **labels, symmatrix_t *tmat, char *ftree)
Creates a UPGMA guide tree. This is a frontend function to the ported Muscle UPGMA code ().
Definition tree.c:54